YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87120441, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSDVNKGR RRFLVGATSA IGAVGAVGIA TPFVASWNPS AKAKAAGAPV KVDISKLEVG  60
   61 QQMIVEWRGQ PVWVVKRSQE TLENLNKIAD ELSDPSSEKD QQPSYAQNEY RSIKPEIAVL 120
  121 LGICTHLGCS PTYRPELSPE DLGPKWVGGY FCPCHGSRFD LAGRVYKGVP APINLEVPPY 180
  181 QFLSDNVILV GDDGGNA

Type	Start	End	Confidence
Cytoplasmic	1	12	0.63
Transmembrane Helix	13	34	0.66
Non-Cytoplasmic	35	197	0.94