YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86164365, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAAFLITSL FQGSDFLKPI ITLIYCFLVS LSTGLMANDL ANNPTSLNPQ TSNELRLALT  60
   61 QVKLKAMPPL LMQIKQLEEQ QALPLFKTLL AGRLYYVKAD KRLIQMQKKG KERHYFSLET 120
  121 DQPLSELSKN QVKKVKLNNA VRRLLKSTIA ELELNHPDPE LRQAAIESLL KNLDSKLIAQ 180
  181 LEQRRSLETQ EKIRELIQVA LNLFQLKTNP SPAKQIEAIE KLADRLEIPV KNQLTQVAEN 240
  241 SIHPEVKQAA IRALTKIEHA TNRYALVDQL FFGLSLGSVL LLASIGLAIT FGVMGVINMA 300
  301 HGEMIMLGAY TTYVVQLLMP NHIDYSLWVA IPAAFMVSGL MGVIIERGVI RHLHGRPLET 360
  361 LLATFGISLI LQQLVRSVFS PLNRQVFSPS WMTGSLEINP VLSLTLNRLY ILAFALIVFF 420
  421 ALLTLLRKTS LGLNVRAVSQ NRNMAKAMGV KTGWVDAMTF GLGSGIAGIA GVALSQLTNV 480
  481 GPNLGQAYII DSFMVVVFGG VGNLFGTLVA AFSLGIATKF LEPMTGAVLA AIIVLVFIIL 540
  541 FIQKRPKGLF PQKGRAAE

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.55
Transmembrane Helix	16	37	0.63
Cytoplasmic	38	269	0.74
Transmembrane Helix	270	297	0.80
Non-Cytoplasmic	298	325	0.72
Transmembrane Helix	326	345	0.93
Cytoplasmic	346	359	0.70
Transmembrane Helix	360	379	0.84
Non-Cytoplasmic	380	408	0.83
Transmembrane Helix	409	426	0.96
Cytoplasmic	427	451	0.83
Transmembrane Helix	452	474	0.90
Non-Cytoplasmic	475	491	0.78
Transmembrane Helix	492	514	0.88
Cytoplasmic	515	522	0.70
Transmembrane Helix	523	542	0.94
Non-Cytoplasmic	543	558	0.89