YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194538825, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.56
Transmembrane Helix	6	26	0.82
Cytoplasmic	27	29	0.54
Transmembrane Helix	30	51	0.65
Non-Cytoplasmic	52	57	0.69
Transmembrane Helix	58	78	0.89
Cytoplasmic	79	87	0.87
Transmembrane Helix	88	111	0.88
Non-Cytoplasmic	112	119	0.74
Transmembrane Helix	120	141	0.89
Cytoplasmic	142	191	0.66
Transmembrane Helix	192	214	0.83
Non-Cytoplasmic	215	222	0.58
Transmembrane Helix	223	257	0.77
Cytoplasmic	258	268	0.77
Transmembrane Helix	269	291	0.84
Non-Cytoplasmic	292	298	0.64
Transmembrane Helix	299	324	0.80
Cytoplasmic	325	334	0.93
Transmembrane Helix	335	357	0.90
Non-Cytoplasmic	358	363	0.80
Transmembrane Helix	364	384	0.91
Cytoplasmic	385	581	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDADTINSFF LIGALLIALS VLLSPVSSKL GIPILLVFLA VGMLAGEDGL GGILFDNFSI  60
   61 AYLVSNLALA IILLDGGMRT RVASFRVALW PSVSLATFGV AITTILTGLM ATWLFDLDLL 120
  121 QGILVGAIVG STDAAAVFSL LKGRSLNERV GSTLEIESGT NDPMAVFLTV TLIAILANPD 180
  181 ADLSVGFLAL SFLKQFGIGA LLGFAGGWIL WKVINRNQLP DGLYSILTVS GGLLIFALSN 240
  241 ALGGSGILSI YLVGLLLGNR PTRSRHSILH VLDGMTWLAQ IGMFLVLGLL VTPSNLLSIA 300
  301 LPGLALAFGM ILFARPISVW IGLLPFKSFT PREKWFVSWV GLRGAVPIIL AVFPMMAGLP 360
  361 DAQLYFNLAF FVVMVSLIVQ GGTLTKAMSL AKVELPSKPE PISRTGVEIY PTSEWELFIY 420
  421 KLKADKWCIG EPLRSLSMPD GTRIAAVFRN KALLHPSGST RLEEDDTLCV LAQEKDLDAL 480
  481 SLLFSEAPEK ASLARFFGDF FLDIEVNLAD IAMMYGLNLG DESLDKSLRH LVEEQLGTTP 540
  541 VLGDQFEWQG LQWIIADVVD QQVTKVGIRL PSEQSLLADE E