YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116184008, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.98
Transmembrane Helix	110	130	0.90
Non-Cytoplasmic	131	155	0.85
Transmembrane Helix	156	176	0.91
Cytoplasmic	177	186	0.69
Transmembrane Helix	187	207	0.90
Non-Cytoplasmic	208	225	0.92
Transmembrane Helix	226	244	0.93
Cytoplasmic	245	254	0.79
Transmembrane Helix	255	277	0.94
Non-Cytoplasmic	278	299	0.79
Transmembrane Helix	300	320	0.82
Cytoplasmic	321	339	0.73
Transmembrane Helix	340	361	0.82
Non-Cytoplasmic	362	369	0.63
Transmembrane Helix	370	390	0.65
Cytoplasmic	391	398	0.81
Transmembrane Helix	399	422	0.86
Non-Cytoplasmic	423	436	0.81
Transmembrane Helix	437	460	0.91
Cytoplasmic	461	474	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIARKDVE RLIELVGGPD NIASVSHCLT RLRFVLNDTD KADTKQLEAL PMVKGCFTNA  60
   61 GQFQVVIGTE VDEVYKVLIE LSGKSEASKD ESKNAARQNM NIVERGISHL AEIFVPLLPA 120
  121 IITGGLILGF RNVIGDIKMF DGQTLTEISQ FWATVHSFLW LIGEAIFFFL PVGVCWSTVK 180
  181 KLGGTPILGI TLGVTLVSPQ LMNAYLIGKQ VPEVWDFGLF AIEKVGYQAQ VIPAMLAGIA 240
  241 LAFIETRLKR IIPSYLYLVV VPFVSIIVSV ILAHSIIGPF GRMLGDGVAF AAKAAMTGDF 300
  301 AMIGSTIFGF LYAPLVITGI HHTTNAVDLQ LMQELGGTPI WPLIALSNIA QASAVVGIII 360
  361 ISKKQDEREI SVPAAISAYL GVTEPAMYGI NLKYKFPMLS AMIGSACAAA ICGSAGVMAN 420
  421 GIGVGGLPGI LSIQPQFWGI FALAMLVAMV VPAALTLLLY KRAQAKGELE AANA