YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75854152, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSRGPFCIR HAAADTFAMV VFCFITGMIV EILISGMTFE QSLASRTLSI PVNIAIAWPY  60
   61 GVFRDWVLRQ GNKVSPSSFM KNVSDLVAYV LFQSPVYAGI LFAVGASTDQ IVTAVTSNAI 120
  121 ISCGMGVLYG YFLDMCRRWF RVPGYSQSI

Type	Start	End	Confidence
Cytoplasmic	1	12	0.91
Transmembrane Helix	13	35	0.88
Non-Cytoplasmic	36	42	0.80
Transmembrane Helix	43	63	0.86
Cytoplasmic	64	85	0.80
Transmembrane Helix	86	106	0.90
Non-Cytoplasmic	107	110	0.88
Transmembrane Helix	111	133	0.91
Cytoplasmic	134	149	0.97