YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116183264, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTSSQNHQ YFSPKEMMAE AEKFALSKAN KTSSMTLSLA IMAGAFIGLA FLFYITVTTG  60
   61 SAGAGWGLSR LAGGLAFSMG LILIVICGGE LFTSSVLSSI SWANKQISFG KMLSIWGKVY 120
  121 VGNFIGAMFL LALVTAAGLY QMDSGQWGLN ALNIAQHKLH HTLIQAFALG ILCNLLVCLA 180
  181 IWLTFSSANA MTKAAMTIMP VAMFVSSGFE HCVANMFMVP LGIVIANFAP ESFWASVGVP 240
  241 ASQYADLNIG HFITANLIPV TLGNIVGGAV LVGLANWCIF RRPELKAANI SSITTTTTLS 300
  301 SVKDFTMKNA SFVKDIMNPK PVTISAETPI AIALDVLLDN NVTSAPVVDV QNRLVGFFSA 360
  361 HDVMVELWCE DYIPVKDQKV VDIMSRDVVA IDAGDRLVDV VEFLCIDKEQ LYPTSSMGIA 420
  421 TRMTSLSLEE RAKSIKVSKP QVLPVLENGQ MVGVVTRTEV LKALRPIFGE RLNLVEKNEL 480
  481 ETA

Type	Start	End	Confidence
Cytoplasmic	1	34	0.98
Transmembrane Helix	35	57	0.90
Non-Cytoplasmic	58	74	0.81
Transmembrane Helix	75	98	0.88
Cytoplasmic	99	118	0.86
Transmembrane Helix	119	140	0.94
Non-Cytoplasmic	141	162	0.93
Transmembrane Helix	163	185	0.93
Cytoplasmic	186	203	0.76
Transmembrane Helix	204	226	0.80
Non-Cytoplasmic	227	256	0.85
Transmembrane Helix	257	280	0.89
Cytoplasmic	281	483	0.97