YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87118407, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSFNALPIF VALVETGSFS KAGEHLNSSK SAVSKRITQL ENELGAQLLN RTTRSLTLTE  60
   61 AGEAYYDYAS QALALAQEAE NAVSLMQAKP KGKLKLSVPM TFGRLYIAPI IPAFMALYPD 120
  121 IQIEMIMDDK RQDFIKQGFD IGIRIGQLED SSLVAKKLAD CQSYLCAAPA YLDKQGTPKK 180
  181 PEDLTRHNCL YYSYFRAGQD WQFLKKSVRH RNYQDSDFIR VAAKGNYRVN NSEALYEAAL 240
  241 AGLGIVNMPT FIVGPAIRET QLIPLLTDYP QPLHGIYAIF PERKHLTAKV RVFIDFLQEK 300
  301 IGKETPVWEQ GL

Type	Start	End	Confidence
Signal Peptide	1	20	0.82
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	312	0.96