YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86166022, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIDTELNT DAESEADLAE STSATATNYS EIIYNGIWKN NPALVQLLGL CPLLAVTSTV  60
   61 VNALGLGLAT LVVLIGANIA VSLIRNYVSD AVRLPAFVMI IASFVTSIEL IMQAYTYELY 120
  121 QILGIFIPLI VTNCAILGRA DAFAARNPAL PSALDGLMMG LGFMAVLLVL GAMRELIGQG 180
  181 TLFSDMQLLL GDVAINWKIE VFKDYPDVLF AILPPGAFIG LGLLIALKNS WDEKAKAIAE 240
  241 KNQDKSEKQD RRVRVTG

Type	Start	End	Confidence
Cytoplasmic	1	41	0.62
Transmembrane Helix	42	61	0.66
Non-Cytoplasmic	62	62	0.56
Transmembrane Helix	63	84	0.84
Cytoplasmic	85	93	0.71
Transmembrane Helix	94	112	0.94
Non-Cytoplasmic	113	119	0.68
Transmembrane Helix	120	140	0.90
Cytoplasmic	141	152	0.80
Transmembrane Helix	153	173	0.90
Non-Cytoplasmic	174	207	0.89
Transmembrane Helix	208	227	0.92
Cytoplasmic	228	257	0.93