YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75814297
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.94
Transmembrane Helix	26	44	0.92
Non-Cytoplasmic	45	64	0.86
Transmembrane Helix	65	84	0.91
Cytoplasmic	85	93	0.91
Transmembrane Helix	94	115	0.93
Non-Cytoplasmic	116	119	0.78
Transmembrane Helix	120	142	0.87
Cytoplasmic	143	160	0.86
Transmembrane Helix	161	182	0.92
Non-Cytoplasmic	183	189	0.83
Transmembrane Helix	190	209	0.96
Cytoplasmic	210	254	0.94
Transmembrane Helix	255	274	0.88
Non-Cytoplasmic	275	294	0.94
Transmembrane Helix	295	314	0.92
Cytoplasmic	315	322	0.88
Transmembrane Helix	323	342	0.93
Non-Cytoplasmic	343	351	0.78
Transmembrane Helix	352	374	0.93
Cytoplasmic	375	383	0.85
Transmembrane Helix	384	406	0.90
Non-Cytoplasmic	407	415	0.82
Transmembrane Helix	416	438	0.92
Cytoplasmic	439	452	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFELFKPAAH TQRLPSDKVD SVYSRLRWQL FIGIFVGYAG YYLVRKNFSL AMPYLIEQGF  60
   61 SRGDLGVALG AVSIAYGLSK FLMGNVSDRS NPRYFLSAGL LLSALVMFCF GFMPWATGSI 120
  121 TAMFILLFLN GWFQGMGWPA CGRTMVHWWS RKERGEIVSV WNVAHNVGGG LIGPIFLLGL 180
  181 WMFNDDWRTA FYVPAFFAVL VAVFTWLVMR DTPQSCGLPP IEEYKNDYPD DYDKSHENEM 240
  241 TAKEIFFKYV FNNKLLWSIA IANAFVYLIR YGVLDWAPVY LKEAKHFTVD KSSWAYFLYE 300
  301 WAGIPGTLLC GWISDKVFKG RRAPAGILFM VLVTLAVLVY WFNPAGNPAV DMAALVAIGF 360
  361 LIYGPVMLIG LYALELAPKK AAGTAAGLTG LFGYLGGAVA ANAILGYTVD HFGWDGGFMV 420
  421 LVASCVLSVL CLIYAFVGER AHHNDKLKQA TI