YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116190692, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.80
Transmembrane Helix	16	36	0.82
Non-Cytoplasmic	37	47	0.79
Transmembrane Helix	48	68	0.90
Cytoplasmic	69	77	0.86
Transmembrane Helix	78	101	0.88
Non-Cytoplasmic	102	108	0.68
Transmembrane Helix	109	131	0.77
Cytoplasmic	132	181	0.57
Transmembrane Helix	182	204	0.87
Non-Cytoplasmic	205	212	0.57
Transmembrane Helix	213	247	0.77
Cytoplasmic	248	258	0.76
Transmembrane Helix	259	282	0.83
Non-Cytoplasmic	283	288	0.81
Transmembrane Helix	289	313	0.85
Cytoplasmic	314	324	0.90
Transmembrane Helix	325	347	0.89
Non-Cytoplasmic	348	353	0.78
Transmembrane Helix	354	374	0.90
Cytoplasmic	375	571	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGALLIGIS VLLSPVSSKL GIPILLVFLA VGMLAGEDGI GQIAFDNYPV AYLVSNLALA  60
   61 IILLDGGMRT RVASFRVAFW PSVSLATLGV AVTTLLTGLL AMWLFNLSLL QGVLVGAIVG 120
  121 STDAAAVFSL LKGRSLNERV GATLEIESGT NDPMAVFLTV TLIAVLGSAE TNLSAGFLLL 180
  181 SFIQQFGVGA LLGLAGGWIL WWLINRNQLP EGLYSILAVS GGLMIFALSN ALGGSGILSI 240
  241 YLTGLLLGNR PTRSRHAILN VLDGMTWLAQ IGMFLVLGLL VTPSELMEIA LPGLALAVGM 300
  301 ILFARPIAVW IGLAPFKSFT AREKWFVSWV GLRGAVPIIL AVFPMMAGLP NAQLYFNLAF 360
  361 FVVMVSLVVQ GGTLTKAMSL AKVELPPKPE PISRTGVEIY PTSEWELFIY KLKADKWCIG 420
  421 EPLRNLFMPE GTRIAAVFRD NQLLHPSGST ELCEGDTLCV MAQERDLESL SRLFSEAPEK 480
  481 ASLARFFGDF FLDIEAKLQD VALLYGLDLG ELEADAKLKD LVLEHLGETP VLGDYFEWHG 540
  541 LQWVVADVVD WKVTKIGLRL PPEEELQEGA E