YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229355083, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.65
Transmembrane Helix	8	28	0.93
Cytoplasmic	29	48	0.72
Transmembrane Helix	49	67	0.61
Non-Cytoplasmic	68	70	0.55
Transmembrane Helix	71	105	0.66
Cytoplasmic	106	129	0.92
Transmembrane Helix	130	154	0.84
Non-Cytoplasmic	155	167	0.86
Transmembrane Helix	168	190	0.89
Cytoplasmic	191	198	0.86
Transmembrane Helix	199	218	0.95
Non-Cytoplasmic	219	233	0.76
Transmembrane Helix	234	254	0.81
Cytoplasmic	255	292	0.91
Transmembrane Helix	293	313	0.92
Non-Cytoplasmic	314	341	0.90
Transmembrane Helix	342	363	0.92
Cytoplasmic	364	378	0.96
Transmembrane Helix	379	401	0.91
Non-Cytoplasmic	402	408	0.73
Transmembrane Helix	409	428	0.95
Cytoplasmic	429	469	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLLWGSIL VYLLVGVGIY FTLRLGFIQF RHFTHTFTVL KNSRKADNAG ISSFQALCTS  60
   61 LAARVGTGNM AGVAVALTAG GPGAIFWMWL IAMLGMATSF AESTLAQLYK TRDKDGNYRG 120
  121 GPAYYMEKGL GMRWMGVLFS IFLIIAFGLV FNAVQANSIT NAMKTAFGFE PMLIGIGIVL 180
  181 LTAFVIFGGI RKIARTAELI VPFMAFAYLA IALFVVVMNY EKVPDAISLI FKSAFGLQEA 240
  241 AAGGLGYAIA QAMINGVKRG LFSNEAGMGS APNAAASATP YPPHPASQGY VQMLGVFIDT 300
  301 IVICTATVAI ILMSGEYVPH GELTGIELTQ RALSSQVGDW GGIFIAFAIF FFAFTSIIAN 360
  361 YSYAETNLIF LEHNNKKGLV LFRLVFLGMV MFGSLATLPT VWAMADVSMG LMAIVNLVAI 420
  421 LLLSGIVIKL AKDYNRQLDA GKVPTFDAND YPELKSQLED GIWDNNKAS