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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|86196596, gi|...
Protein type: Transmembrane
Type Confidence: 0.61
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVHVTSAAQ WRQILSSSSV VITDFYADWC GPCKMIAPTF ESLSTKYSKP NRITFCKVDV  60
   61 DSQREIAQQY AVSAMPTFLI LKSGSVVETI KGANPPALTA AVERAVKLAG PATGGGAAFS 120
  121 GGGQRLGGGG GPSGTRSGPR QFQRPGNWDL NSIINSIIVF FGLYFVSLFS FDPYKAAESS 180
  181 KYNIKNPPAR SANVKPAGSA GARPGQSRQD LLHLFEYGFT GPLAARRAPS SMRTASLRQY 240
  241 HATRIGITSS QQRNLSTTRS LNQTPPETPA SSQGPSQSAT EQAAPADTQK TTSEDAPLEY 300
  301 PERPEGEATP EEIEQFVRET KATFGDTLPP HFLYEEEYQV YQRLFGPPLR ATEPEDIGIG 360
  361 SIAVEDGVDS NGEPGHRGPA LLREDGQGGL EEVEYTPALK TREAADAEAG EETDADLEAD 420
  421 LEALNNDPRI KYLQGVAKNQ RQYEALLQLQ ADFEAASLQS LLDEDAKIAA AEAEMVQAAQ 480
  481 SDDGATAEQV KEFSWDVQAG EELDAAAYKA REMDQWDEGH RETDRLHELT LEGQSRTNPS 540
  541 TIFIPKESII EPITKLLKRT DPKHVKEAAE TVFGGPGLPY SARTPYNMRN AKQVGVALRA 600
  601 TDHRMSEIEA DAYMATVLPT TYSTITSILS EVRKRLGTEW LRGLMQKNEG KGPRVLDVGA 660
  661 AGAGLLAWQH VVEAEWGVMQ SEGIWNNLEA PIGKRTALVG SNFLRHRVSQ LLENTTFIPR 720
  721 LPDYLHSAVN VSKHIDAPAE PKERKTYDVI IMSHILMPLD KQFKREALLD NLWSQLNPDG 780
  781 GILIVMEKGH PRGFEAVADV RMRLLDEFIV PPGSTFSSKS TGADVEDHIQ TKEAKERVRE 840
  841 HGMIIAPCTN HKTCPMYQTP GFTFGRRDFC HFSQRFIRPP FFQKVLGGVH QNHEDVDYSY 900
  901 LAVRRGGGQS AESSSTEATT AGDMDTNTRK SPPGGPWQGK EATDRAFEGY GKKGEAPPSM 960
  961 LSLPRNILPP LKRTGHVVMD VCTPDGNIER WTVPKSHGKQ AYHDARKARW GDLWALGARQ1020
 1021 RELRKVRLGK PGTEVLNDRA NPLGGKGDGG VRARRALAQA QARSQLDKIN LDVSQTGNIE1080
 1081 GASNKARQHQ VERRTKKGRL PPKQSELDRL KKESNEDEFD DDEDMDPEVA KALREMEQGA1140
 1141 FKCGRKACNT TVEAKTRQQK PQRSAPGMKL QQIQKAGMIG LHIRMTSAIP QPKSKSASKS1200
 1201 NSQLKEDLLA KSKSNEPVMK QPMKQQSSSI PQTPHRLLRS TNPPTPSRNP NRHPPKTPHQ1260
 1261 QQVDQAKGQE KEGDADIPQD TFESPSQLPP TSPQQRPTTD GYQQPSSAPP PSTGPVLVDV1320
 1321 TNNAWISSRI ADSAGKSTID 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle