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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|86196450, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNFLARAS RQSVRRVATG SHSKGITLFR PRRYASSSAA SSTRQSSSGS IGVSAVVAVA  60
   61 LAAGLVGYGA AVSLGAGGTV REDTPIIHDS RLPTPKYASL ADMNKAIEEI RRDLGDHDII 120
  121 STDPDDLHAH GYSEWSTVNP TTLPVAVAYP HNTEQVAVIA RICNKQRIPL VPYSGGTSLE 180
  181 GNFSAPFGGV SVDFAFMDKI VRFSKDDMDV TVQPSIGWQD LNAQLLKMDT GLFFPIDPGP 240
  241 SAKIGGMVGT NCSGTNAVRY GTMRDWVVNL TVVLADGSVI KTRRRPRKSS AGYNLNGLFV 300
  301 GSEGTLGLVT EGIPLSSLQS FQEELSVAVV TFPSIRDAAA AAAGVMQAGV PVAAMEIMCE 360
  361 VQMRVVSLSG ATAPRKWQET PTLFFKFSGT KAGVKENIGK VQQIAKANKG SNFEFAKDER 420
  421 EQKLLWSARK ESLWSMLAAT QGGPGGLFAS ILGHIGDGNF HESIMYNRGD PVERAKVEGC 480
  481 VKNMVNRALE MEGTCTGEHG IGWGKKESLL VELGAGTVGV MKAIKAALDP HWIIFFAGIE 540
  541 QKNVRMDPPP APPPPQRSGG LSPTGRGARP FQRSAISHIC IPVDRWKDYT SMDLQLFGLP 600
  601 MNITTWEIWR AFDAQVDVLT IDIFEGRNGS MARVRIIPPA TDLWHGRLQI RRDVQAMVVC 660
  661 RVEIDPRGFR FHNEIYSPLN NPVPSEKSIR ASSLSVGLMT DKTCMLVMGT IKPLRNPDDL 720
  721 KLEIKFTKRR INLFFTLALL DTRDPSKDSY RHFRYKVDVQ FRNITKLLRV NINEDSCFLL 780
  781 IPLECPPQFF REIDNKRITH NDESLTWTSV MDWQRQVHFR DEPQVAEDMP LGLNEEHTQF 840
  841 MDLGRWTTYR IELLTQQWSA MERYLSDYGI STQETSDFDF ASPDDHPTVI WDHLEKPPSP 900
  901 ESDNYGLEML FSSTKVQLTW EVRYQLEACI SHRMLAEPNI TLEFLEKLSE MRPTKARIML 960
  961 EYVVDRNVKL YNPMQLFKDE GASTYWPDIT PEELPQYCTM TRKVTVTPST MYLSSPMVET1020
 1021 TNRVLRHYNE HKDRFLRVQF TDELPTGRLH APNDLGADDE IFSRVYRVLK NGIHIGDRHY1080
 1081 KFLAFGSSQM RENSTYFFCD AGDVTCDSIR AWMGRFSHIR NVGKYAARLG QCFSTTRSID1140
 1141 RVAMPWIKTI PDIEKNGYCF TDGVGKISSL WAVVISENLK LDYIPSAFQF RMGGCKGVLV1200
 1201 VWEDVKGQEI HIRPSQLKFE TDHSRLEVIR CSHFSVASLN RQTISVLTSL GVKNEVFESM1260
 1261 LAEQLAKYNR AMEDATAAMT LLTQYVDENQ MTNTLARLVK AGFMESHEPF VCTMLRLWRT1320
 1321 WSVKTLKEKA RLVVEKGAFV LGCVDETKTL HGHFTHIPAS PNQRPRLNGN MKLPEIFLQV1380
 1381 PDGPSRDYKV ITGLCLVGRN PSLHPGDIRV VQAIDVPQLR HIRDVVVFAQ TGDRDIPGMC1440
 1441 SGGDLDGDDF FVLWDERLLP LPSQRNYKPA SYHPPPAREL DREVTADDLC QFFVTYMKNF1500
 1501 SLPRIAHAHL AQADKYGAKD EKCLELAYLH SLAVDYPKTG VPAAIRPRLM PNEFPHFMEK1560
 1561 ARGRYHSRKI LGKLYDQVKP VNFHPAYEMP FDVKILSLYG ELSQHGDLGP KLLREARKLK1620
 1621 TLYDQSIMRI MGQHEIATEF EVFSAFVLSS RRVGSQYKLG EIVGQQSATL KTVFREKCIA1680
 1681 ALETVSGRTG IKPRDIEAFG PFVVAMYKVT DEEIKIALHE CKTRGVKANP KSMPLITFPW1740
 1741 IFDQILVQLV TGKSNLPCLT PSKLDAGSMT IDLDHLQLPI RLNDLSYQEI RNIEYARTRD1800
 1801 GHVIHRGVVL NSLFRAGEGG ENYDYDLDLQ PDTEKPEHRD EELTHQEPQS SLVTLDAAES1860
 1861 TTYKPKNENY DLLSGIAFTP EILQERIMTS ICSASGKQTA ASSLATSTTP RVMRLEIEST1920
 1921 NEIGDLIELE QKLPTAKAET AIGRLLEMFS DD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle