YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75824929
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.96
Transmembrane Helix	30	48	0.93
Non-Cytoplasmic	49	68	0.86
Transmembrane Helix	69	88	0.91
Cytoplasmic	89	97	0.91
Transmembrane Helix	98	119	0.93
Non-Cytoplasmic	120	123	0.78
Transmembrane Helix	124	146	0.87
Cytoplasmic	147	164	0.86
Transmembrane Helix	165	186	0.92
Non-Cytoplasmic	187	193	0.83
Transmembrane Helix	194	213	0.96
Cytoplasmic	214	258	0.94
Transmembrane Helix	259	278	0.88
Non-Cytoplasmic	279	298	0.94
Transmembrane Helix	299	318	0.92
Cytoplasmic	319	326	0.88
Transmembrane Helix	327	346	0.93
Non-Cytoplasmic	347	355	0.78
Transmembrane Helix	356	378	0.93
Cytoplasmic	379	387	0.85
Transmembrane Helix	388	410	0.90
Non-Cytoplasmic	411	419	0.82
Transmembrane Helix	420	442	0.92
Cytoplasmic	443	456	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEVTMFELFK PAAHTQRLPS DKVDSVYSRL RWQLFIGIFV GYAGYYLVRK NFSLAMPYLI  60
   61 EQGFSRGDLG VALGAVSIAY GLSKFLMGNV SDRSNPRYFL SAGLLLSALV MFCFGFMPWA 120
  121 TGSITAMFIL LFLNGWFQGM GWPACGRTMV HWWSRKERGE IVSVWNVAHN VGGGLIGPIF 180
  181 LLGLWMFNDD WRTAFYVPAF FAVLVAVFTW LVMRDTPQSC GLPPIEEYKN DYPDDYDKSH 240
  241 ENEMTAKEIF FKYVFNNKLL WSIAIANAFV YLIRYGVLDW APVYLKEAKH FTVDKSSWAY 300
  301 FLYEWAGIPG TLLCGWISDK VFKGRRAPAG ILFMVLVTLA VLVYWFNPAG NPAVDMAALV 360
  361 AIGFLIYGPV MLIGLYALEL APKKAAGTAA GLTGLFGYLG GAVAANAILG YTVDHFGWDG 420
  421 GFMVLVASCV LSVLCLIYAF VGERAHHNDK LKQATI