YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254225893, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLMTFFDIN HTLVNIPIGG GYAMSWIEAV GTLFGLLCIW FASQEKTINY LFGLINVTLF  60
   61 AVIFYQIQLY GILLLQLFFF CANIYGWYAW TRPNAQGDTL VVRWMSRQKL LLTACISVIS 120
  121 IILMTIYIDP VFFSLANITV DVLNLFGAQL DRPVLSPDAF PFWDATMTVL SVVAQILMTR 180
  181 KYVENWILWV VINIISVGIY AAQGVYALSI EYAILLFIAA NGTRAWMQTA RHNAEKNLTN 240
  241 EATA

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.93
Transmembrane Helix	18	41	0.89
Cytoplasmic	42	47	0.83
Transmembrane Helix	48	67	0.89
Non-Cytoplasmic	68	71	0.77
Transmembrane Helix	72	91	0.93
Cytoplasmic	92	109	0.96
Transmembrane Helix	110	128	0.97
Non-Cytoplasmic	129	158	0.89
Transmembrane Helix	159	178	0.90
Cytoplasmic	179	185	0.81
Transmembrane Helix	186	204	0.91
Non-Cytoplasmic	205	207	0.54
Transmembrane Helix	208	227	0.63
Cytoplasmic	228	244	0.64