YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75822876, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.96
Transmembrane Helix	29	47	0.93
Non-Cytoplasmic	48	67	0.86
Transmembrane Helix	68	87	0.91
Cytoplasmic	88	96	0.91
Transmembrane Helix	97	118	0.93
Non-Cytoplasmic	119	122	0.78
Transmembrane Helix	123	145	0.87
Cytoplasmic	146	163	0.86
Transmembrane Helix	164	185	0.92
Non-Cytoplasmic	186	192	0.83
Transmembrane Helix	193	212	0.96
Cytoplasmic	213	257	0.94
Transmembrane Helix	258	277	0.88
Non-Cytoplasmic	278	297	0.94
Transmembrane Helix	298	317	0.92
Cytoplasmic	318	325	0.88
Transmembrane Helix	326	345	0.93
Non-Cytoplasmic	346	354	0.78
Transmembrane Helix	355	377	0.93
Cytoplasmic	378	386	0.85
Transmembrane Helix	387	409	0.90
Non-Cytoplasmic	410	418	0.82
Transmembrane Helix	419	441	0.92
Cytoplasmic	442	455	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVTMFELFKP AAHTQRLPSD KVDSVYSRLR WQLFIGIFVG YAGYYLVRKN FSLAMPYLIE  60
   61 QGFSRGDLGV ALGAVSIAYG LSKFLMGNVS DRSNPRYFLS AGLLLSALVM FCFGFMPWAT 120
  121 GSITAMFILL FLNGWFQGMG WPACGRTMVH WWSRKERGEI VSVWNVAHNV GGGLIGPIFL 180
  181 LGLWMFNDDW RTAFYVPAFF AVLVAVFTWL VMRDTPQSCG LPPIEEYKND YPDDYDKSHE 240
  241 NEMTAKEIFF KYVFNNKLLW SIAIANAFVY LIRYGVLDWA PVYLKEAKHF TVDKSSWAYF 300
  301 LYEWAGIPGT LLCGWISDKV FKGRRAPAGI LFMVLVTLAV LVYWFNPAGN PAVDMAALVA 360
  361 IGFLIYGPVM LIGLYALELA PKKAAGTAAG LTGLFGYLGG AVAANAILGY TVDHFGWDGG 420
  421 FMVLVASCVL SVICLIYAFV GERAHHNDKL KQATI