YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75822859, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIFGSIAMV VLAYIAVGPL MLSKPRTGRK LNRWSRSDRA LHWSMAFTFL TLAFSGLMLV  60
   61 YGKHFLKPYI PSELWGWIIY AAKQYHNYMG PLFFILLMFV LLKWWRKSIF NKVDVQWFMK 120
  121 LGGMVGKHKG SHPSAGFSNG GEKAIYWLLI VFGTFAAISG LVLDFPIFGQ TRRDMELSNL 180
  181 IHMFSALILI CGFIFHIYIG LFGMEGALEG MVTGKVDETW AKEHHDLWYE EVKRRGEIEE 240
  241 ASTESQPASF NQTKGEVSHE SR

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.90
Transmembrane Helix	5	23	0.92
Cytoplasmic	24	40	0.90
Transmembrane Helix	41	62	0.92
Non-Cytoplasmic	63	84	0.90
Transmembrane Helix	85	105	0.91
Cytoplasmic	106	143	0.90
Transmembrane Helix	144	167	0.89
Non-Cytoplasmic	168	179	0.81
Transmembrane Helix	180	202	0.91
Cytoplasmic	203	262	0.87