YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116215444, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.78
Transmembrane Helix	10	30	0.91
Non-Cytoplasmic	31	36	0.65
Transmembrane Helix	37	56	0.86
Cytoplasmic	57	67	0.67
Transmembrane Helix	68	95	0.78
Non-Cytoplasmic	96	105	0.54
Transmembrane Helix	106	132	0.79
Cytoplasmic	133	134	0.41
Transmembrane Helix	135	149	0.54
Non-Cytoplasmic	150	150	0.05
Transmembrane Helix	151	165	0.56
Cytoplasmic	166	193	0.59
Transmembrane Helix	194	216	0.89
Non-Cytoplasmic	217	234	0.76
Transmembrane Helix	235	254	0.89
Cytoplasmic	255	260	0.62
Transmembrane Helix	261	279	0.84
Non-Cytoplasmic	280	309	0.75
Transmembrane Helix	310	330	0.88
Cytoplasmic	331	350	0.66
Transmembrane Helix	351	371	0.83
Non-Cytoplasmic	372	431	0.72
Transmembrane Helix	432	454	0.77
Cytoplasmic	455	481	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQAQQRLPS LTQVIVSLGL FLLLAFSFTA KLDLPIQLAL YIGWFVIMTL GIRLGHKYKD  60
   61 LENAALNGIS NGLGAVLILL AVGALVGTWI SGGIVPTIIY YGLKAIHPSI FLLATMVICS 120
  121 LTALATGTSW GAAGTAGIAM MGIGQGLGIP APITAGAVLS GCYFGDKMSP LSDSVILASS 180
  181 MSNVEVMEHI KGMLPIALIS YVITGILFTL FGFHYAGNVD MSQVETVIAA MEQQFYITPY 240
  241 SFVPVLIVLG LLVMRMPSFP VISFGSLLGI VWAVMIQDVD FLQAFNTAWA PYNIESGVSF 300
  301 IDAILNRGGM SSMLGSVAVI VFGLGFGGLL DRVGVLETIA KLFERRVTSP GSLATSTIGT 360
  361 AFMGNVFGSA MYVSLILTPK ICAKNYDRLG YQRKNLSRNA EFGGTLTSGM VPWSDNGIYM 420
  421 ASILGVATLS YAPFMWLSFV CILVTIITSY CGWFVDKCEP TQAMNEQEVT AEEIQKAPAS 480
  481 A