YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152964166, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGGGTEQLD PPAGASPARP RTGPMTAAKN ALDRVLSWVC VVLFAALVLD VVWQVFTRQV  60
   61 LDAPSAWSEE LAKYLFIWLG LLGSALVFGE RGHVGVELLV QKAPPGVQRV LALVVQLSVL 120
  121 AFALVALAWG GGQVVDLAWD QKVTGLPFNV GQLYLALPIC GVLTALYTVH HAIRIARGDE 180
  181 PPFEPDAEVE TV

Type	Start	End	Confidence
Cytoplasmic	1	34	0.97
Transmembrane Helix	35	56	0.91
Non-Cytoplasmic	57	73	0.90
Transmembrane Helix	74	94	0.88
Cytoplasmic	95	109	0.91
Transmembrane Helix	110	131	0.93
Non-Cytoplasmic	132	149	0.92
Transmembrane Helix	150	170	0.90
Cytoplasmic	171	192	0.94