YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254225597, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVMSKKVDV VIIGAGAAGL MCAAQAAQRG RQVLLLDHAK KPGRKILISG GGRCNFTNYD  60
   61 VSSANYLCQN PHFVKSALSQ YTNWDFISLV SKYGIAYEER DHGQLFCLDS AKEIVDMLLS 120
  121 ECNQPNIEQR YQVEISTIAH TEQGFTLQTT IGEIECASLV VATGGLSMPK LGATPFGYKI 180
  181 AEQFGLPVIT TTAGLVPFTL HVQDKEDFAP LSGVAIPVEM RAECGKTFKE ALLFTHRGLS 240
  241 GPAVLQISSY WTPGQTITTN LVPDVDLAEM LNSEKEAHPN QSLKNTLSKV LPKRLVEVLI 300
  301 ERQLFADKPL KQYSPKELDA VQTRLEQWSI VPNGTEGYRT AEVTLGGVDT DCLSSKTMEC 360
  361 KTVKGLFFIG EVMDVTGWLG GYNFQWAWSS GYVAGQWV

Type	Start	End	Confidence
Signal Peptide	1	26	0.97
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	398	0.99