YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116220475, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQKLSRATR FVLPLLAALL CWLAQPVMAE ENAKPDVVQK EMTQLAGADF WHQVRQGEAG  60
   61 YTTSQSPEHG VLISKPGETW FILKEKWMSP AGAVAIFGSI AMVVLAYIAV GPLMLSKPRT 120
  121 GRKLNRWSRS DRALHWSMAF TFLTLAFSGL MLVYGKHFLK PYIPSELWGW IIYAAKQYHN 180
  181 YMGPLFFILL MFVLLKWWRK SIFNKVDVQW FMKLGGMVGK HKGTHPSAGF SNAGEKAIYW 240
  241 LLIVFGTFAA ISGLVLDFPI FDQTRRHMEL SNLIHMFSAL ILICGFIFHI YIGLFGMEGA 300
  301 LEGMVTGKVD ETWAKEHHDL WYEEVKRRGE IEDASAESET TALNQVKGEV SHESR

Type	Start	End	Confidence
Signal Peptide	1	29	0.99
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	90	0.99
Transmembrane Helix	91	115	0.90
Cytoplasmic	116	133	0.95
Transmembrane Helix	134	155	0.94
Non-Cytoplasmic	156	177	0.91
Transmembrane Helix	178	198	0.91
Cytoplasmic	199	236	0.91
Transmembrane Helix	237	260	0.89
Non-Cytoplasmic	261	272	0.83
Transmembrane Helix	273	295	0.91
Cytoplasmic	296	355	0.88