YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116219659, gi...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIALLRILAV AVFAVYMFVF GCGYCLFSPR NPKHVYTFGK QFAAMSKVFG IKLEYRAPAD  60
   61 VDQRGQHIYI ANHQNNWDLF TVSKAVTPKV VTVGKKSLAW MPLFGQLYWL TGNILIDRAN 120
  121 KAKAKGTIDQ VVDSMKQSDV SVWMFPEGTR SRGRGLLPFK AGAFHAAIGA GVPIIPIVCS 180
  181 STDKLKFNRW NNGHVIVEVL PPISTEGYSK ENIRELSQHC HDLMKDKLAQ LDAEVAELNR 240
  241 KA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.36
Transmembrane Helix	7	27	0.66
Non-Cytoplasmic	28	242	0.64