YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86147964, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDHKTLIKN GMWANNPALV QLLGLCPLLA VSSTVTNALG LGIATLLVLV GSNVSVSLVR  60
   61 NHVPKEVRIP VFVMIIASLV TCVQLLMNAY AYGLYLSLGI FIPLIVTNCI IIGRAEAFAS 120
  121 KNEVLPAAQD GFWMGLGMTS VLVVLGAMRE VIGNGTLFDG ADLLLGDWAS VLRIQIFQFN 180
  181 NSFLLALLPP GAFIGVGFLI ALKNIIDNQA KSRQPKQEKP AIERARVTNA

Type	Start	End	Confidence
Cytoplasmic	1	11	0.88
Transmembrane Helix	12	31	0.89
Non-Cytoplasmic	32	37	0.72
Transmembrane Helix	38	59	0.90
Cytoplasmic	60	68	0.82
Transmembrane Helix	69	87	0.96
Non-Cytoplasmic	88	93	0.67
Transmembrane Helix	94	113	0.91
Cytoplasmic	114	130	0.83
Transmembrane Helix	131	152	0.89
Non-Cytoplasmic	153	182	0.93
Transmembrane Helix	183	206	0.88
Cytoplasmic	207	230	0.98