YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86147902, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	220	0.99
Transmembrane Helix	221	246	0.84
Cytoplasmic	247	260	0.80
Transmembrane Helix	261	283	0.88
Non-Cytoplasmic	284	292	0.84
Transmembrane Helix	293	315	0.93
Cytoplasmic	316	336	0.90
Transmembrane Helix	337	359	0.91
Non-Cytoplasmic	360	375	0.81
Transmembrane Helix	376	397	0.93
Cytoplasmic	398	410	0.80
Transmembrane Helix	411	427	0.94
Non-Cytoplasmic	428	433	0.71
Transmembrane Helix	434	454	0.88
Cytoplasmic	455	465	0.78
Transmembrane Helix	466	489	0.80
Non-Cytoplasmic	490	618	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLATLLFV CVSLFTQPAW ALFGNDNAEP SFGGNNNGFV PVDQAFPFNY YQQDGKVLLD  60
   61 WQVKKGYYLY QHSLSFTGQN LTIGNVEMEN GQPHQDEFFG EVSIYTQPLF VQVPLQSYQD 120
  121 SSQLIVKYQG CADAGFCYPP EIRVIDIEPF TATSSGDMKS SDDQNSGALQ GSSGEADNSV 180
  181 QASSPTADAA SNTTQQTNAP VSKEAGLADK LGDSWWTPLL FLALGVGLAF TPCVLPMYPI 240
  241 LTGIVLGGGK LSQGRALMLS FIYVQGMALT YTLLGLVVAS AGMQFQAAMQ HPYVLIALSV 300
  301 LFVTLAMSMF GVYNLQLPSS IQTWLNNQSN KQQGGNTLGV FAMGAISGLV CSPCTTAPLS 360
  361 GALLYVAQSG DLLTGAFALY ALAMGMGIPL ILVAVFGNKL LPKAGSWMDK VKIVFGFILL 420
  421 AAPIFLLERI IPELWATVLW SGLGFIAFGW LYHSKNALPF GGWKQSAVGI IAMLGLFASA 480
  481 QPALNYWFAE KSVVVEQQIQ FARVNTVEEL EIQLIEAKKL GKPVMLDFYA DWCVACKEFE 540
  541 KYTFHQADVE NKLSDFVLLQ ADVTRNMPQD IELLKQLQVL GLPTIEFWDG EGNHVPNARV 600
  601 TGFMAADVFL KHMQDHQL