YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86147772, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQILDFIPL IIFFALYKMY DIYTATGALI VASAVQIILT YIIYKKVEKM QIITFLMVAV  60
   61 FGGMTIFLHD DNFIKWKVTI VYALFAIGLT VSHLMGKSAI KGMLGKEISL PEAVWGKINW 120
  121 AWTLFFTLCA ILNVYVAFNL PLDVWVNFKV FGLLIATFAF TLLTGVYIYK HLPKDQHLPK 180
  181 DKHQQRDQET QNDTQQELSG KNTEEK

Type	Start	End	Confidence
Non-Cytoplasmic	1	21	0.90
Transmembrane Helix	22	43	0.94
Cytoplasmic	44	51	0.81
Transmembrane Helix	52	69	0.97
Non-Cytoplasmic	70	77	0.81
Transmembrane Helix	78	97	0.94
Cytoplasmic	98	117	0.89
Transmembrane Helix	118	138	0.94
Non-Cytoplasmic	139	147	0.79
Transmembrane Helix	148	169	0.91
Cytoplasmic	170	206	0.96