YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|121629856, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	32	0.89
Non-Cytoplasmic	33	50	0.89
Transmembrane Helix	51	75	0.84
Cytoplasmic	76	86	0.81
Transmembrane Helix	87	108	0.91
Non-Cytoplasmic	109	113	0.72
Transmembrane Helix	114	132	0.93
Cytoplasmic	133	139	0.84
Transmembrane Helix	140	163	0.89
Non-Cytoplasmic	164	171	0.84
Transmembrane Helix	172	194	0.91
Cytoplasmic	195	216	0.91
Transmembrane Helix	217	236	0.92
Non-Cytoplasmic	237	240	0.71
Transmembrane Helix	241	258	0.71
Cytoplasmic	259	291	0.67
Transmembrane Helix	292	314	0.82
Non-Cytoplasmic	315	325	0.61
Transmembrane Helix	326	347	0.91
Cytoplasmic	348	354	0.57
Transmembrane Helix	355	378	0.84
Non-Cytoplasmic	379	385	0.47
Transmembrane Helix	386	406	0.76
Cytoplasmic	407	415	0.63
Transmembrane Helix	416	437	0.91
Non-Cytoplasmic	438	453	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVALLFILV IGMMIVGVPI AISLGLSSIL FLLWHSDASL ASVAQTLFNA FAGHYTLLAI  60
   61 PFFILASTFM STGGVAKRII RFAIAMVGWF RGGLAIASVV ACMMFAALSG SSPATVVAIG 120
  121 SIVIAGMVKN GYSKEFAAGV ICNAGTLGIL IPPSIVMVVY SAATNVSVGR MFLGGVVPGL 180
  181 LAGLMLIIAI YITARIKNLP KQPFVGWKEA LKAAKEASWG LLLVVIILGG IYGGIFTPTE 240
  241 AAAVAAVYSF FIANFIYRDM GPFADKTNTK PVLVKVVETF VHKDTKATLY DAGKLTIMLM 300
  301 FIIANALILK HVLTEERIPQ MITESMLSAG LGPITFLIVV NLILLVGGQF MEPSGLLVIV 360
  361 APLVFPIAIA LGIDPIHLGI MMVVNMEIGM ITPPIGLNLF VTSGVAKMSM MNVVKAALPW 420
  421 VGVMFLFLII VTYVPWVSTW LPTLLMGPEI ITR