YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86148422, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.58
Transmembrane Helix	7	27	0.78
Cytoplasmic	28	52	0.78
Transmembrane Helix	53	74	0.70
Non-Cytoplasmic	75	78	0.60
Transmembrane Helix	79	99	0.86
Cytoplasmic	100	125	0.85
Transmembrane Helix	126	150	0.87
Non-Cytoplasmic	151	159	0.89
Transmembrane Helix	160	181	0.91
Cytoplasmic	182	189	0.84
Transmembrane Helix	190	211	0.95
Non-Cytoplasmic	212	234	0.97
Transmembrane Helix	235	256	0.91
Cytoplasmic	257	272	0.93
Transmembrane Helix	273	297	0.90
Non-Cytoplasmic	298	318	0.92
Transmembrane Helix	319	344	0.87
Cytoplasmic	345	364	0.96
Transmembrane Helix	365	386	0.84
Non-Cytoplasmic	387	393	0.59
Transmembrane Helix	394	415	0.85
Cytoplasmic	416	421	0.80
Transmembrane Helix	422	440	0.97
Non-Cytoplasmic	441	448	0.77
Transmembrane Helix	449	470	0.91
Cytoplasmic	471	497	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMWFLTCVAA LIGGYFIYGA FIEKIFGVNE KRQTPAHTKQ DGVDYVPMST PKVYLVQLLN  60
   61 IAGVGPIFGP IMGALYGPAA MLWIVLGCIF AGAVHDYFSG MLSIRNGGAS VPTITGRYLG 120
  121 NGAKHFMNIF AIVLLLLVGV VFVSAPAGMI TNLVNDQTDF AMSATTMVVI IFAYYIIATI 180
  181 VPVDKIIGRF YPLFGALLIF MSVGLITAIG LSDEHQIMGG FEMKDMFTNM NPNDLPLWPA 240
  241 LFITIACGAI SGFHATQSPL MARCMENEKN GRFVFYGAMI GEGIIALIWC ALALSFFGSV 300
  301 ESLSDAIANG GPGNVVYSAS FGLLGVFGGI LAFLGVVILP ITSGDTAFRS SRLILAEYFN 360
  361 MEQKTLRNRL LMALPLFVIG GILTQVDFGI IWRYFGFANQ STAVMMLWTA SAYLLRHNKL 420
  421 HWVTTVPAVF MTSVCITFIL NNSQLGFGLP MQLSTIIGVV SAFGIAAYVI KISKGKGDID 480
  481 LADEESEKEA KPVTKTA