YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86147160, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPTASGYI EHHLQNLSLA KFGLVEETSF WNVHIDSLFF SVLTGMLFLW VFRSVAKKAT  60
   61 VGVPGKLQCF VEMVVEFVGD NVKETFHGRN PLIAPLALTI FCWIIIMNLM DLVPIDFLPY 120
  121 PAEHWLGIPY LKVVPTADVN ITMAMALGVF ALMIYYSIKV KGLGGFAKEL ALHPFNHPIM 180
  181 IPFNLVLEVI SLLAKPLSLG MRLFGNMFAG EVVFILIAAM LPWYLQWVGA LPWAIFHILV 240
  241 ILIQAFVFMM LTIVYLSMAH EDSDH

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.85
Transmembrane Helix	33	52	0.89
Cytoplasmic	53	91	0.88
Transmembrane Helix	92	115	0.85
Non-Cytoplasmic	116	135	0.83
Transmembrane Helix	136	158	0.87
Cytoplasmic	159	202	0.71
Transmembrane Helix	203	225	0.89
Non-Cytoplasmic	226	232	0.62
Transmembrane Helix	233	256	0.91
Cytoplasmic	257	265	0.64