YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|133712655, gi...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDSTDSIAV DMETIYLGGK EHVIRTGHGC VSVILYGDEE KPPLITYPDV ALNHMSCFQG  60
   61 LFFSPEAASL LLHNFCIYHI TPPGHELGAA SICPDVPVPS VDDLCDQILE VLNHFRLGAV 120
  121 MCMGAMAGAY LLTLFAIRYR DRVTGLILIS PLCKAPSWTE WLYNKLMSNL LYYYGMCSLS 180
  181 KECLLQRYFS KEVRGTPEIP ESDIVQACRK LLDERQSINV LRFLQAIHRR PDITQELEKL 240
  241 KCRTLIFVGD NSLFHSEALH MSEKLDRRFS ALVEVQGCGS MVTEEQPHAM LVSLEYFLIG 300
  301 FGLYRPSESD GSPRSPLSPF SISPELLSPE SLGLKLKPIK TRVLSRGGDS TCYSS

Type	Start	End	Confidence
Cytoplasmic	1	116	0.52
Transmembrane Helix	117	137	0.82
Non-Cytoplasmic	138	355	0.52