YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85835748, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.92
Transmembrane Helix	18	41	0.85
Cytoplasmic	42	53	0.93
Transmembrane Helix	54	75	0.89
Non-Cytoplasmic	76	95	0.85
Transmembrane Helix	96	118	0.92
Cytoplasmic	119	126	0.95
Transmembrane Helix	127	147	0.95
Non-Cytoplasmic	148	187	0.92
Transmembrane Helix	188	208	0.94
Cytoplasmic	209	218	0.81
Transmembrane Helix	219	238	0.94
Non-Cytoplasmic	239	387	0.99
Transmembrane Helix	388	409	0.92
Cytoplasmic	410	420	0.85
Transmembrane Helix	421	444	0.88
Non-Cytoplasmic	445	471	0.94
Transmembrane Helix	472	494	0.89
Cytoplasmic	495	528	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDVVDLSRL QFAFTAMYHF LFVPLTLGMA FLLAIMESVY VMTGKQIYKD MTKFWGKLFG  60
   61 INFALGVATG LTMEFQFGTN WSYYSHYVGD IFGAPLAIEA LVAFFLESTF VGLFFFGWDR 120
  121 LSKRQHLAVT WLVALGSNFS ALWILVANGW MQNPVGAEFN FETMRMEMVS FAEVVLNPVA 180
  181 QVKFVHTVAS GYTTGAMFIL GISSYYILKG RDLAFARRSF AIAASFGMAA ILSVIVLGDE 240
  241 SGYELGEVQK VKLAAIEAEW HTEEAPAAFT VFGVPNQETM HTDYAIKIPY VMGIIATRSF 300
  301 DTEVTGLRDL RDDHVDRIRT GMYAYELLEK LRGGDRSEEN KAAFDEVKGD LGYGLLLKRY 360
  361 TDDVVDATED QIQMAADDSI PTVWPLFWSF RLMVACGFIM LFVFGAAFVQ TCRQKIEQKP 420
  421 WVLKAALFSI PLPWIAIEAG WFVAEFGRQP WAVGEILPVN VAASALTIEQ LWTSLFAILA 480
  481 LYTVFLIAEV YLMLKFARKG PSSLKTGRYH FEQNDNSVED KVSRSVEV