YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86146468, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFELKKVVSS LLMPLPAMLI LAFLGLALVM FTAKRKTGCL ITLSALCGIF LIAFQPVSSQ  60
   61 LLMPMERQHT AFLPIDDTVD YIMVLGSGHV VDDQIPPTSE LSRTGLMRLS EGIRILRLYP 120
  121 GAKLILSGYG AGTEVSNAKM MAKVALALGV AKPDIILLET AKDTWEEARQ AAAFVKNKKM 180
  181 VLVTSASHMT RALNEFNAAG MKPLPAPTNY LAQEGIVEPW NKYMPKAIYL EQTERYWHET 240
  241 MGLVWQSLRD WLDTSNDPVE SSTPTVNN

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.62
Transmembrane Helix	10	31	0.89
Cytoplasmic	32	37	0.59
Transmembrane Helix	38	58	0.89
Non-Cytoplasmic	59	268	0.72