YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86146371, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQSVDIAIV GGGMVGLALA AALKDSDLRI AVIEGRAPSE GLSELPDVRV SALSRSSEVI  60
   61 LRNLGAWQGI EQRRAAPYQA MEVWEQDSFA RIEFDSTRLA QPNLGHIVEN RVIQLALLDQ 120
  121 VKKQDNVSLY MPATCKTMAI GESEAWLTLD NGQALTAKLV VGADGANSWV RKQQDIPLTH 180
  181 WDYGHSAIVA NIKTSEPHHS VARQIFTPQG PLAFLPMQPS KMSSIVWSTE PNRAEKLVSM 240
  241 SDADFNKQLT AEFDSKLGLC EVVGDRFAFP LRMRYARDFA VERVALVGDA AHTIHPLAGQ 300
  301 GVNLGLLDAA SLAQELLTLW ASGEDIGTKR NLRGYERWRK AEAAKMIASM QGFKDLFEGD 360
  361 NPAKKLIRGI GMKLAGQLPG AKDEIMKRAL GLSGNLPDLA KRPVVHR

Type	Start	End	Confidence
Signal Peptide	1	20	0.80
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	407	0.98