YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228900953, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIENYLLFII MSICLIILPG PDTAMATKNT LIAGKVGGVK TVFGTCIALL IHTLAAVIGL  60
   61 SALIVKSALL FSIFKYVGAL YLIYIGIKAL LAVRNKEGVD TNDISLNNEN KHTSCFRQRF 120
  121 LTNLLNPKIA VFFLTFLPQF LNPNHNTFIQ LLVMGLTYLV LTAFWFAFYI FLIDKISAFM 180
  181 KKPKTQRYIQ GLTGIVLIGF GVKLAFEKSN

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.73
Transmembrane Helix	6	26	0.87
Cytoplasmic	27	40	0.65
Transmembrane Helix	41	64	0.84
Non-Cytoplasmic	65	67	0.53
Transmembrane Helix	68	87	0.78
Cytoplasmic	88	119	0.86
Transmembrane Helix	120	141	0.79
Non-Cytoplasmic	142	148	0.84
Transmembrane Helix	149	172	0.90
Cytoplasmic	173	187	0.89
Transmembrane Helix	188	206	0.88
Non-Cytoplasmic	207	210	0.83