YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228901679, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.96
Transmembrane Helix	14	35	0.93
Non-Cytoplasmic	36	42	0.81
Transmembrane Helix	43	65	0.88
Cytoplasmic	66	81	0.94
Transmembrane Helix	82	105	0.90
Non-Cytoplasmic	106	111	0.87
Transmembrane Helix	112	133	0.92
Cytoplasmic	134	143	0.80
Transmembrane Helix	144	163	0.92
Non-Cytoplasmic	164	187	0.85
Transmembrane Helix	188	208	0.93
Cytoplasmic	209	218	0.98
Transmembrane Helix	219	242	0.84
Non-Cytoplasmic	243	253	0.83
Transmembrane Helix	254	276	0.88
Cytoplasmic	277	286	0.81
Transmembrane Helix	287	309	0.85
Non-Cytoplasmic	310	315	0.65
Transmembrane Helix	316	339	0.88
Cytoplasmic	340	350	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKMKRLSF LDRYLTLWIF LAMAVGIGLG FVFPSVVDGL NTLQVGTTSI PLAAGLIVMM  60
   61 YPPLAKVRYE EMGRVFKDVK VLVLSLVQNW IIGPVLMFVL AIIFLPDKPE YMVGLIMIGL 120
  121 ARCIAMVIVW NDLADGDKEY AAGLVAFNSV FQMLFFSVYA YVFVTVIPEW LGIEGAIVDI 180
  181 TMVEVAKSVF IYLGIPFIAG MLTRFVLVKL KGRQWYEKVF IPKISPLTLL ALLFTIIIMF 240
  241 SLKGEMIVSV PLDVVRIAIP LLIYFIVMFF VSFFMGRKIG ANYPVTTTLA FTAGSNNFEL 300
  301 AIAVAVGVFG IHSGAAFAAV IGPLVEVPVM IALVNVAFWF KRKYFNDQPV