YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228854009, gi...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIGLVLEG GGMKGLYTAG VLEYFMEKNL FFPYVVGVSA GACMGATYLS RQKGRNKKVN  60
   61 TELVSDYRYI SYRNLIRKRE LFGMDFLFDE VPNKIVPFDF QTFLNCNEQF VIGTTDCESG 120
  121 RAVYYNKIEH GNDILKIIRA SSSVPFIAPA VEYDNRKLLD GGIIDPIPVL KAQTDGYEKN 180
  181 VVIMTKPEGY EKQRNKFSRL AKILYRKYPN IAESLVEHYR FYNETISYMN QIEQKDNFYV 240
  241 IQPSVQLPIS GIERNKEKLV NLYNLGYIDA QYHYENVLNW IEK

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.77
Transmembrane Helix	30	50	0.71
Cytoplasmic	51	283	0.57