YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84378385, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.62
Transmembrane Helix	17	39	0.87
Cytoplasmic	40	47	0.61
Transmembrane Helix	48	69	0.91
Non-Cytoplasmic	70	93	0.64
Transmembrane Helix	94	121	0.67
Cytoplasmic	122	132	0.67
Transmembrane Helix	133	156	0.71
Non-Cytoplasmic	157	164	0.80
Transmembrane Helix	165	187	0.92
Cytoplasmic	188	233	0.94
Transmembrane Helix	234	254	0.91
Non-Cytoplasmic	255	265	0.76
Transmembrane Helix	266	285	0.94
Cytoplasmic	286	294	0.88
Transmembrane Helix	295	315	0.93
Non-Cytoplasmic	316	336	0.86
Transmembrane Helix	337	357	0.88
Cytoplasmic	358	364	0.77
Transmembrane Helix	365	388	0.86
Non-Cytoplasmic	389	417	0.90
Transmembrane Helix	418	440	0.88
Cytoplasmic	441	442	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYFEFLFLL VVLYIGSRYG GIGLGVVSGI GLVIEVFVFK MPPTSPPVTV MLIILAVVTC  60
   61 ASILEAAGGL KYMLQVAERV LRKNPKRVTL IAPFVTYSMT FLLGTGHAVY SIMPIIGDVA 120
  121 LKNGIRPERP MAAASVASQL AITASPISAA VVYYLAQLSD IQHSITLLSI LMVTVPATLF 180
  181 GTLLLSLYSL KRGKELNDDP EYQARLKDPE WKKRIESTTA TSLDEVLPTS ARNAVLIFLL 240
  241 SIVVIVIVAM VPEIRTIVDG DKPIKMSVII QMMMLCFGGI ILLATKTDPR DVPNGVVFKS 300
  301 GMVAAIAIFG IAWMSDTYFQ YAMPQFKSGI VEMVTNYPWT FALALFIVSV VVNSQAATAR 360
  361 MMLPVGLGLG LDPALLIGLM PAVYGYFFIP NYPSDIATVN FDVSGTTKIG KWYFNHSFMS 420
  421 VGLIGVVGAC CLGYALAQIF IA