YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85837480, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLENNVAPQ ANPTNSQGKT MNKIALKKAR ARKDAVLSGF IWAAAALTVG FLFWIMWYIL  60
   61 SNGLQHVDWN FITDDYTRTG DEHGIFPMII STIYMVIASI AVAAPLGIMT AIYLTEYAKV 120
  121 GSRLVKIIRF CTESLAGIPS IIFGLFGMTF FVAILGLGFS ILSGALTLSI LILPVIIRTT 180
  181 EEALMAVSQT YREGSYGLGA SKIYTIWRLI LPSAMPGIIT SVILSIGRVI GESAPVFLTA 240
  241 GMVARIPDSL LDSGRTLTVH LYKLTTELFT IEEWNQAYGT ATVLIVLVLL INTLTKLIAR 300
  301 RFNTATY

Type	Start	End	Confidence
Cytoplasmic	1	35	0.99
Transmembrane Helix	36	60	0.89
Non-Cytoplasmic	61	92	0.92
Transmembrane Helix	93	114	0.93
Cytoplasmic	115	126	0.90
Transmembrane Helix	127	150	0.81
Non-Cytoplasmic	151	152	0.49
Transmembrane Helix	153	177	0.84
Cytoplasmic	178	208	0.89
Transmembrane Helix	209	230	0.88
Non-Cytoplasmic	231	276	0.95
Transmembrane Helix	277	298	0.89
Cytoplasmic	299	307	0.94