YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85837310, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.97
Transmembrane Helix	53	72	0.94
Non-Cytoplasmic	73	78	0.79
Transmembrane Helix	79	99	0.97
Cytoplasmic	100	119	0.98
Transmembrane Helix	120	141	0.95
Non-Cytoplasmic	142	146	0.83
Transmembrane Helix	147	167	0.92
Cytoplasmic	168	173	0.92
Transmembrane Helix	174	193	0.95
Non-Cytoplasmic	194	200	0.82
Transmembrane Helix	201	221	0.94
Cytoplasmic	222	242	0.95
Transmembrane Helix	243	265	0.87
Non-Cytoplasmic	266	269	0.79
Transmembrane Helix	270	290	0.90
Cytoplasmic	291	304	0.82
Transmembrane Helix	305	323	0.92
Non-Cytoplasmic	324	324	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSRTSTQYE VVAQDAALTH KIAVNNDIAL SNEIAIKNKA TWKIYLTLTK PKVVALMLLT  60
   61 ALVGMCLAVP NGLPLQQTVF GMIGIGLMAG SAAAFNHLID KKIDGQMTRT NRRPLPSGEL 120
  121 SSVRVFSFAA GIGLLGFATL MVWVNQLTAW LTFASLLGYA VIYTMYLKRA TPQNIVIAGI 180
  181 AGAMPPLLGW TAVTNELHSN AWLLVMIIFI WTPPHFWALA IHRRDEYAKV NIPMLPVTHG 240
  241 IEYTKTSILL YTLLLSIVCV LPVLVGMSSW IYLSASLVLN GGFVYHAWVL KYRDEPNMAM 300
  301 KTFKFSIYHL MILFVALLAD HYLL