YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75763238, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFVYINQNV LNNLLYILCS IFVFYFIYDS RHYLKKYKIL LITLCSSIPL ILCMRYPIYM  60
   61 DESCIHDLRQ IPVIIGTLYG GFPVGIILFT ILLITRFIFY GFNMLTVVVY GIMFIVTALA 120
  121 SSKFNTYNRK LKVAFSMFLT FFLAIFTTVI VLTLSDFEVN NLYIIYFMVL PTTLMLFIVY 180
  181 INEVIKDAVL MRSKLIKMEK MEIVSQLAAS ISHEVRNPLT VVKGFTQLLK TPNLTPESRD 240
  241 EYIKHILEEL NRAQEIIDDY LTFAKPSPEK LDQISVKQEL NRVINMILPL CNMNTIHITQ 300
  301 DFSEATIVGN KQHFQQCFLN LIKNSIEAMP NGGTLNISSS INNSKVEIRI EDSGVGMSQE 360
  361 QIHRFGEPYF STKTKGTGLG TMVAVKIIET MYGSLKIRSI VSKGTTLTIT FPKYGKNTH

Type	Start	End	Confidence
Cytoplasmic	1	9	0.86
Transmembrane Helix	10	28	0.95
Non-Cytoplasmic	29	38	0.74
Transmembrane Helix	39	59	0.90
Cytoplasmic	60	72	0.87
Transmembrane Helix	73	94	0.91
Non-Cytoplasmic	95	99	0.64
Transmembrane Helix	100	121	0.87
Cytoplasmic	122	132	0.78
Transmembrane Helix	133	154	0.93
Non-Cytoplasmic	155	161	0.86
Transmembrane Helix	162	184	0.91
Cytoplasmic	185	419	0.96