YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86140757, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.99
Transmembrane Helix	39	61	0.93
Non-Cytoplasmic	62	82	0.87
Transmembrane Helix	83	103	0.96
Cytoplasmic	104	116	0.85
Transmembrane Helix	117	135	0.91
Non-Cytoplasmic	136	160	0.87
Transmembrane Helix	161	183	0.92
Cytoplasmic	184	222	0.96
Transmembrane Helix	223	243	0.94
Non-Cytoplasmic	244	260	0.85
Transmembrane Helix	261	282	0.92
Cytoplasmic	283	302	0.88
Transmembrane Helix	303	322	0.93
Non-Cytoplasmic	323	343	0.89
Transmembrane Helix	344	364	0.93
Cytoplasmic	365	370	0.91
Transmembrane Helix	371	390	0.90
Non-Cytoplasmic	391	412	0.90
Transmembrane Helix	413	434	0.91
Cytoplasmic	435	596	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHYEAPIR EPLILGEKSY HDISVDVGAP ILGKANKSWW ICFSIALIAF LWGLGCIVYT  60
   61 VSTGIGVWGL NKTIGWAWDI TNFVWWVGIG HAGTLISAVL LLFRQKWRMA INRSAEAMTI 120
  121 FAVVQAGLFP IIHMGRPWLA YWVVPIPNQF GSLWVNFNSP LLWDVFAIST YLSVSLVFWW 180
  181 TGLLPDFAMI RDRTKSPFQQ KIYGILSFGW SGRAKDWQRF EEVSLVLAGL ATPLVLSVHT 240
  241 IVSFDFATSV VPGWHSTIFP PYFVAGAIFS GFAMVQTLLL VMRKVVNLEN YITIVHIEFM 300
  301 NKVILLTGGI VTVAYLTEYF IGWYSGVPYE NYTYLSFGAA TGPYWWAFWA LIICNLIVPL 360
  361 TLWVKKWRRN ILWTFIVALV INIGMWFERF DIIVICLSKD RLASTWTMFS PTFVDIGVFV 420
  421 GTIGFFFVLF LLYARTFPVI AQAEVKSILK SSGERYKRIR ESGEDLAGTA TDERTSNYAA 480
  481 RPESLASASN ADATYHQSTV NADALVDTET KKAEIDLMLA KIGKYDPATQ TADDLKKISG 540
  541 VGPVLEQKLH QLGIYTYDQV SKMTKTEYDL LDEIIDAFPG RAERDDWAGQ AQNLKQ