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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|56606911
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAGHLGTRMP PAVRWSAGWL WIFGAALGQC LGYDSQQQRV VFLQPPGQSH LQASYSEFKP  60
   61 SQGCSPGYYR DHKGLYTGRC VPCSCNGHSH RCQDGSGICI NCQHNTAGNH CERCKEGHYR 120
  121 NAVQGSCMVC PCPHSNSFAT GCVVTGGNVK CSCKPGYTGT QCERCAPGYF GNPQKFGGSC 180
  181 QPCNCNNNGH LGSCDPVTGD CINQEPKDDG PGEECDDCDS CVMTLLNDLA TMEGELRLVK 240
  241 SQLQGLSASA STLEHMRHLE TQTKDLRNQL LNYRSAISNH GSKMDGLEKE LSNINHEFET 300
  301 LQEKVQINSR KVQALPNNVD RTTQRAKGLD TKIKNVIRNV HILLKQQFSG TNGEGNNVLL 360
  361 GDFSRELAEA DRMMRELRSR NFGKQLKDAE DGKKNAQLLL NRIRSWLKKH QVENSGLVKS 420
  421 VRGSLNKYEA KLTDLRAMLQ EAATQAKQAA GLNRENQKTL ESIKRQVKEM NSLQSDFNKY 480
  481 LATADASLLQ TSAVLQLMRK SQEEYEKLAA SLNEAKHELR DKVKELSKSS SKTSLVVAGE 540
  541 KHAQSLQELA KQLEEIKRNT SGDELVRCAV DAATAYENIL NAIKAAEDAA DKATSASESA 600
  601 HQTVIKENLP RKAKTLSSNS EKLLNEAKIT QKKLQQEISP ALNNLQQTLK IMTVQKGLID 660
  661 TNITTIRDDL RGIQRGDIDG MINSAKSIVR NANDITNEVL DGLTPIQTDV ERIKDTYGST 720
  721 QSEDFNKALG DADNSVKKLT NKLPDLLSKI ESINQQLLPL GNISDNVDRI RELIQQARDA 780
  781 ANKVAVPMRF NGKSGVEVRL PNDLEDLKGY TSLSLFLQRP DSRENGGTNN MFVMYLGKKD 840
  841 ASRDYIGMAV VDGQLTCVYN LGEREAELQV DQILTESETQ ESVMDRVKFQ RIYQFARLNY 900
  901 TKKATSSKPE ATQPHDMDSG NSNTLLNLDP ENAVFYVGGY PPDFRLPSRL RFPPYKGCIE 960
  961 LDDLNENVLS LYNFKKTFNL NTTEVEPCRR RKEESDKNYF EGTGYARIPT QPNAPLPIFV1020
 1021 QTIQTTVDRG LLFFAENQDH FISLDIEDGS LLVRYKLNSE SPEEKGIRVI INDGKDHSIQ1080
 1081 IRIGKAQKLM RISVAREDIK INGEIFDFST YYLGGIPISI RERFNISTPA FRGCMKNLKK1140
 1141 TTGVVRLNDT VGVTKKCSED WKLVRSASFS RGGQMSFTNL DFPLPSLFQA SFGFQTFQPG1200
 1201 GILLHHQTRT SSLQVTLEDG HIELSTTDSS SPIFKSPQTY MDGLLHYVSV ISDTSGLRLL1260
 1261 IDDQPLKNNQ RLQGFSGSQQ SLRLGGSHFE GCISNVFVHR SSQSPAVLDL ASKSTKREVS1320
 1321 LGGCSLNEPP FLMLLKGSTR FNTAKTFSIN QPLQDTPVAS PRSKERWRDA QSCPSPPKAQ1380
 1381 ASHGALRFGD SPTSHLLFTV PQELLKSRSR FAVDVQTTSS RGLMFYTGTR NSFMALYLSK1440
 1441 GRLVFALGAE GKKLKLKSKE KFNDGKWHTV AFGQDGEKAR LVVDGLRARE GSWPRSFTVS1500
 1501 LRVPVYLGSP PSEKSKSLPQ SSFVGCLRNV QLDSKPLATP SVSFGVSPCL DGSLEKGIYF1560
 1561 SQEGGHIILA HSVLLGPEFF LVFSIRPRSL TGILIHIGSQ RGKHLCVYME AGKVTASVDS1620
 1621 EAGGILTSVT PKRSLCDGQW HRVAVTIKKH ILHLELDTEY SYTAGQLPFP PASAREPLHI1680
 1681 VGVPANLQTL KLPVWKSFFG CVKNVQVNHI PVPVTEAVEV QGTVSLNGCP DH

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