YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74490416, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPNIKEQSD ETNLYSIRIL FLIVTLLIES VLFVLLYYSL VNTRVNEEMT ALLKRGNSHR  60
   61 DVLEKYYDKQ TISHVALMES EAETTVVITN TNKEILAKSN EINTTINDHI SKMQTRTDHN 120
  121 GAIIENHWKT SNYICTVSPI VVDGKHEGYV YMFLGTESIE KLVNGLTKQF IIAGAITFLL 180
  181 TVITIFLLSH LLTKPLLHMK HATEKMSKGD LSVSLTTTRN DEIGELASSI QTLANDLHYM 240
  241 KTERSEFLAS VAHELRTPLT YVRGYADIAL KESTPPEQRL RYLSIIKDES DYITNLVQDL 300
  301 FSLAQIEQHS FSIQVKEVHL HTFLTRIAEK VNAMYKERYI KVSFSCSPTL LVNLDEQRFE 360
  361 QVIVNILNNA YRHSKEHSHI NISITDEHKR ISITIEDEGE GIPPEDLPHI FDRFYRVDKA 420
  421 RSRSTGGTGL GLSIVKEIVE LHGGNITVTS EVDYGSCFIV SLPSIKKHDY HQ

Type	Start	End	Confidence
Cytoplasmic	1	16	0.56
Transmembrane Helix	17	40	0.87
Non-Cytoplasmic	41	169	0.59
Transmembrane Helix	170	192	0.87
Cytoplasmic	193	472	0.55