YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74490681, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVMSKKQDE TISRKEGKHV MSYIPNMITI ANFVCGLWAI HAVFVHDIYL GAVFIITGML  60
   61 FDLFDGMVAR KLDSVSEIGG ELDSFADLVT FGVAPSILAY SASLKDLQSI GMICALAYSI 120
  121 CGMLRLARFN TRQSKLPTFI GMPIPFAAMC ILILCRLNNP VSVAFGTCVL AYLMVSKIKF 180
  181 PHFKKDIAES LKPERLD

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.94
Non-Cytoplasmic	43	47	0.84
Transmembrane Helix	48	68	0.90
Cytoplasmic	69	83	0.82
Transmembrane Helix	84	102	0.88
Non-Cytoplasmic	103	108	0.73
Transmembrane Helix	109	127	0.94
Cytoplasmic	128	135	0.85
Transmembrane Helix	136	155	0.93
Non-Cytoplasmic	156	160	0.77
Transmembrane Helix	161	180	0.78
Cytoplasmic	181	197	0.82