YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74489902, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFFYSFHHF ITEGLFMSVF TPEEITKLAA NSGRKKGHLS LLPILILGFF GGAFISLGYL  60
   61 LDIHVIGTMP KYWGSFSSFL GAAVFPIGLI LVILAGGELV TGNMMTVSMA WFQKKITLFY 120
  121 FIRNLVIVTF SNFIGAVFVA YFFGHIVGLT EGAFLAKTIS IAQAKLQDTP LQAFISAIGC 180
  181 NWLVCLAVWL SMGSKEFIGK IIGIWFPVMT FVAIGFQHVV ANMFVIPAAI FAGHFTWAEY 240
  241 FPNFIFVFFG NLVGGMLFVA LPYFISHNKK LPSHQEKTEM KNKSLSA

Type	Start	End	Confidence
Cytoplasmic	1	38	0.81
Transmembrane Helix	39	61	0.90
Non-Cytoplasmic	62	78	0.87
Transmembrane Helix	79	102	0.88
Cytoplasmic	103	119	0.87
Transmembrane Helix	120	144	0.89
Non-Cytoplasmic	145	170	0.94
Transmembrane Helix	171	192	0.92
Cytoplasmic	193	200	0.88
Transmembrane Helix	201	226	0.80
Non-Cytoplasmic	227	243	0.77
Transmembrane Helix	244	265	0.94
Cytoplasmic	266	287	0.96