YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74490240, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNHSSLREE KNKQKYKKKT IISLLLAVLL FGGIGYGAYV YMKTSSLVQK SNLNLARGEK  60
   61 SNLREKSVKP IANHVSLLIM GIDENQERQK EYNGAFHTDA LLLATFNKDD KTVKLTSIPR 120
  121 DTYTYVPVEK KTDNITHAYG SGIVNNGKDG GPQASVEAVE QLLQVPVDYF VKFNFGSFTK 180
  181 IVDGLDGIEV DVPVEFTEQN SKDEPDAIHL KKGLQKLNGE EALALARTRH IDSDAMRGQR 240
  241 QQLVIESILS KLKSVGSITK LEKIVEAVDD DFKTNLVMDD ILSFYKYGLN GSVEKIQLAG 300
  301 DDLYLPNGPN GQRVYYYNPN KKDLQSLSNT LRTHLGLSEK QIEEN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	42	0.88
Non-Cytoplasmic	43	345	0.99