YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86141902, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLTQIVLG AAVGEAVLGK KVGNKAMLYG AIAGTIPDLD TIVGKFLDPL TAIEIHRGIS  60
   61 HSIVFSIVMA PILGWLVAQL HKKAQASWKD WSWLFFWGLV THPLLDAHTT WGTQLFWPLD 120
  121 LRLAYQNIFV IDPLYTLPFL VFLILAMRLP KASKKRRKWN NLGLIVSSAY MVLTLVLKGI 180
  181 SYQKFTEALA NEKIEYTQID TRPAAFNTIL WYANIDVGDA YLLGDYSFFD SKPIRFKYVP 240
  241 KDRQLLGDYR DSETIKRLNK ISNGWYAVEK RDSDLYYNDL RFGVYDLDAK DLRFVFSYQL 300
  301 IPDGETLEIE EAKRDPEAMK QVLKSLWDRI WGN

Type	Start	End	Confidence
Non-Cytoplasmic	1	57	0.59
Transmembrane Helix	58	78	0.91
Cytoplasmic	79	90	0.85
Transmembrane Helix	91	111	0.87
Non-Cytoplasmic	112	127	0.86
Transmembrane Helix	128	149	0.88
Cytoplasmic	150	158	0.93
Transmembrane Helix	159	180	0.82
Non-Cytoplasmic	181	333	0.88