YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82468795
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.99
Transmembrane Helix	43	62	0.96
Non-Cytoplasmic	63	69	0.78
Transmembrane Helix	70	90	0.92
Cytoplasmic	91	110	0.91
Transmembrane Helix	111	134	0.89
Non-Cytoplasmic	135	159	0.94
Transmembrane Helix	160	181	0.92
Cytoplasmic	182	221	0.82
Transmembrane Helix	222	248	0.72
Non-Cytoplasmic	249	269	0.73
Transmembrane Helix	270	295	0.86
Cytoplasmic	296	321	0.73
Transmembrane Helix	322	343	0.82
Non-Cytoplasmic	344	385	0.72
Transmembrane Helix	386	408	0.89
Cytoplasmic	409	414	0.61
Transmembrane Helix	415	438	0.86
Non-Cytoplasmic	439	463	0.63
Transmembrane Helix	464	482	0.76
Cytoplasmic	483	502	0.80
Transmembrane Helix	503	525	0.91
Non-Cytoplasmic	526	557	0.87
Transmembrane Helix	558	580	0.79
Cytoplasmic	581	596	0.64
Transmembrane Helix	597	620	0.83
Non-Cytoplasmic	621	635	0.64
Transmembrane Helix	636	660	0.77
Cytoplasmic	661	672	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNSMVGERE ARTEIEREKR DDLEETQNEA DEYRSIPPWK SQITFRGIVA SLIIGVIYSV  60
   61 IVMKLNLTTG LVPNLNVSAA LLAFVFLRSW TKLLTKAGIM TKPFTKQENT VVQTCAVACY 120
  121 SIAVGGGFGS YLLALNKKTY EQSGDHTEGN SPGSTKEPGL GWMTAFLFFT CFVGLLALVP 180
  181 LRKIMIIDYK LTYPSGTATA VLINGFHTPK GNKMAKKQVF GFVKYFSFSF IWAFFQWFFS 240
  241 GGSTCGFIQF PTFGLEAYKN SFYFDFSMTY IGAGMICSYI VNLSLLFGAI LSWGIMWPLI 300
  301 KGLSGDWYPS DLPQGSMKSL NGYKVFISIS LILGDGLYHF IKILLFTARN MYNKLMNHRS 360
  361 GKPNSENDKQ SVADLQRDEI FVRDSIPLWV AAVGYAAFSV VSIIAIPLMF PELKWYFIVV 420
  421 AYVLAPSLSF SNAYGAGLTD MNMAYNYGKV ALFILAAMAG KENGVVAGLV GCGLIKSIVS 480
  481 ISSDLMHDFK TGHMTLTSPR SMLVSQAIGT AIGCVVAPLT FFLFYKAFDV GNPNGEYKAP 540
  541 YGLIYRNMAI LGVEGFSALP QHCLQLCYVF FAFAVAANLV RDLSPEKFGK WVPLPMAMAV 600
  601 PFLVGGYFAI DMCVGSLIVF GWNMRDRVKA GLMVPAVASG LICGDGLWIL PSSLLALAGV 660
  661 KPPICMSFMS SR