YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75760897, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPAKGLNHS KHRKMATVLS IIPGMGQIYN KQFVKGLIFL VLTGSFIVAF ADLLNMGLWG  60
   61 IVTLGTEVPR DHSVFLLVEG ILALIVIAFG LGIYAFNLYD AYQNGKKRDI GTPLNSVKEQ 120
  121 YRNLLDQGFP YLMVSPGFLL LIFVVVFPII FVILIGFTNY DLYHSPPAKL VDWVGFKNFI 180
  181 DIFTLPMWRD TFLSVFSWTV IWTFVATTLQ VALGIFLAII VNQPGIKGKA IIRTIFILPW 240
  241 AVPAFVSILV FAGMFNETFG AINNQVLALF GIEKIAWMTD PFWSKIALIM IQTWLGFPFV 300
  301 FAMTTGILQS IPGELYEAAT VDGATAWQQF RKITLPLVLY ATAPILITQY TFNFNNFSII 360
  361 YLFNNGGPAV SGQNAGGTDI LISWIYKLTM TSAQYGKAAA LTMILSLIVI TVALWQFKRT 420
  421 KSFQEEDMM

Type	Start	End	Confidence
Cytoplasmic	1	32	0.86
Transmembrane Helix	33	56	0.83
Non-Cytoplasmic	57	74	0.72
Transmembrane Helix	75	98	0.90
Cytoplasmic	99	136	0.75
Transmembrane Helix	137	157	0.93
Non-Cytoplasmic	158	197	0.82
Transmembrane Helix	198	221	0.90
Cytoplasmic	222	233	0.81
Transmembrane Helix	234	255	0.90
Non-Cytoplasmic	256	285	0.88
Transmembrane Helix	286	308	0.87
Cytoplasmic	309	332	0.83
Transmembrane Helix	333	352	0.87
Non-Cytoplasmic	353	394	0.77
Transmembrane Helix	395	417	0.88
Cytoplasmic	418	429	0.79