YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67915560, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIIWMRMNN RDERNTQTHR FFTVFAVSVL LHVLLVAGSI YLQYMAGLSR PQLNTIDVAL  60
   61 VTLPGPGSVE RVDMSDGLPS PPEPEPVEEP EISQPEVTQP PPLPAEPKKR KAVKKVPEKI 120
  121 VRKPVQEKKT SVEESLEKLE QKVEKAQPSD FERKLALLQQ KVSKGPPSDL YTRTGPGRSG 180
  181 PGDGEYGAPL SPLERYAVAI RAIITRNWSF TPQLIQQKGE VIAYVAMTIQ TGGAVSGITF 240
  241 DRKSSSQYFD DTVLKAIEKS SPLPPVPPEV SGKALRIGFV FTPQGIE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	42	0.98
Non-Cytoplasmic	43	287	0.97