YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|189499484, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDFFLQFNP VTQALIATLF TWGVTAAGAA LVFFSKALNQ KVMDSMLGFA AGVMIAASFW  60
   61 SLLAPGIEMA EQLGHIPWLT AVIGFMGGGI FMRVTDRFLP HLHPGLSMDK SEGIKTSWQR 120
  121 STLLVLAITL HNIPEGLAIG VAFGAVAANL PSATIGAAIA LAIGIGIQNF PEGTAVSMPL 180
  181 RREGMSKGKS FFLGQSSGMV EPIAGVIGAY FVLKMQDILP YALCFAAGAM IFVVVEELIP 240
  241 ESQRKYENID LVTMATMAGF SVMMILDVAL G

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.93
Transmembrane Helix	14	35	0.94
Cytoplasmic	36	44	0.84
Transmembrane Helix	45	64	0.95
Non-Cytoplasmic	65	73	0.77
Transmembrane Helix	74	95	0.91
Cytoplasmic	96	121	0.88
Transmembrane Helix	122	145	0.79
Non-Cytoplasmic	146	149	0.65
Transmembrane Helix	150	170	0.89
Cytoplasmic	171	190	0.90
Transmembrane Helix	191	212	0.95
Non-Cytoplasmic	213	217	0.90
Transmembrane Helix	218	239	0.91
Cytoplasmic	240	248	0.90
Transmembrane Helix	249	270	0.88
Non-Cytoplasmic	271	271	0.97